STM32Cube FW_F1 V1.8.0 package breaks HAL time source init

Posted on 2019-09-042019-09-04 by Ivan

As a hobby I’m working on a growbox controller which based on stm32 MCU. Yesterday I got STM32Cube MCU package update, as many times before I just upgraded package and project to latest version, as result firmware started to stuck in assert_failed().

It happens during call of SystemClock_Config() (defined in main.c) which in turn calls HAL_RCC_ClockConfig(), which in turn calls HAL_InitTick(uwTickPrio) at Drivers/STM32F1xx_HAL_Driver/Src/stm32f1xx_hal_rcc.c:947:

...
  /* Update the SystemCoreClock global variable */
  SystemCoreClock = HAL_RCC_GetSysClockFreq() &gt;&gt; AHBPrescTable[(RCC-&gt;CFGR &amp; RCC_CFGR_HPRE) &gt;&gt; RCC_CFGR_HPRE_Pos];
 
  /* Configure the source of time base considering new system clocks settings*/
  HAL_InitTick(uwTickPrio);
 
  return HAL_OK;
}

When it happens uwTickPrio still have invalid interrupt priority, which is defined in Drivers/STM32F1xx_HAL_Driver/Src/stm32f1xx_hal.c:80:

...
/** @defgroup HAL_Private_Variables HAL Private Variables
  * @{
  */
__IO uint32_t uwTick;
uint32_t uwTickPrio   = (1UL &lt;&lt; __NVIC_PRIO_BITS); /* Invalid PRIO */
HAL_TickFreqTypeDef uwTickFreq = HAL_TICK_FREQ_DEFAULT;  /* 1KHz */
...

Only one place where uwTickPrio can be updated is ./Drivers/STM32F1xx_HAL_Driver/Src/stm32f1xx_hal.c:234:

__weak HAL_StatusTypeDef HAL_InitTick(uint32_t TickPriority)
{
  /* Configure the SysTick to have interrupt in 1ms time basis*/
  if (HAL_SYSTICK_Config(SystemCoreClock / (1000U / uwTickFreq)) &gt; 0U)
  {
    return HAL_ERROR;
  }
 
  /* Configure the SysTick IRQ priority */
  if (TickPriority &lt; (1UL &lt;&lt; __NVIC_PRIO_BITS))
  {
    HAL_NVIC_SetPriority(SysTick_IRQn, TickPriority, 0U);
    uwTickPrio = TickPriority;
  }
  else
  {
    return HAL_ERROR;
  }
 
  /* Return function status */
  return HAL_OK;
}

But this function is redefined in ./Core/Src/stm32f1xx_hal_timebase_tim.c:42:

HAL_StatusTypeDef HAL_InitTick(uint32_t TickPriority)
{
  RCC_ClkInitTypeDef    clkconfig;
  uint32_t              uwTimclock = 0;
  uint32_t              uwPrescalerValue = 0;
  uint32_t              pFLatency;
 
  /*Configure the TIM4 IRQ priority */
  HAL_NVIC_SetPriority(TIM4_IRQn, TickPriority ,0);
 
...

And doesn’t contain proper uwTickPrio initialization, as result it’s called with invalid TickPriority and fails into assert_failed() during HAL_NVIC_SetPriority(TIM4_IRQn, TickPriority ,0) call.

How to just send logs from files to graylog2

Posted on 2019-02-132019-02-13 by Ivan

That solution allows to read logs from file and just send them to remote syslog/graylog server. Logs will not influent on current syslog settings, you won’t need to filter them out of any syslog facility (like local7), all you need – the rsyslog (I’ve used v8).

My task was to send logs which wrote by java application (if I’m right log4j was used), they were rotated by logrotate with truncation, so few specific options were added.
I replaced %APP-NAME% in rsyslog’s template(RSYSLOG_SyslogProtocol23Format) to be able differentiate from which files log messages were read.

As for me, it’s better to write logs in format which allow them to be parsed easily or send them right to remote location , but if you need to do it quickly without modification of application it’s appropriate solution. Just copy config below in file like /etc/rsyslog.d/99-graylog.conf and modify TARGET.ADDRESS, TARGET.PORT, app_ tag and File setting according to your environment.

module(load="imfile")

template(
name="SyslogProtocol23Format_modified" type="string"
string="<%PRI%>1 %TIMESTAMP:::date-rfc3339% %HOSTNAME% %syslogtag%%$.suffix% %PROCID% %MSGID% %STRUCTURED-DATA% %msg%\n"
)

ruleset(name="sendToLogserver") {
action(type="omfwd" Target="TARGET.ADDRESS" Port="TARGET.PORT" Template="SyslogProtocol23Format_modified")
}

ruleset(name="app_logs") {
set $.suffix=re_extract($!metadata!filename, "(.*)/([^/]*)", 0, 2, "unknown.log");
call sendToLogserver
stop
}

input(
type="imfile"
File="/var/log/app_logs/*.log"
Tag="app_"
Ruleset="app_logs"
freshStartTail="on"
addMetadata="on"
)

In my case application wrote multi-line log messages, so startmsg.regex was used. Also logs were rotated by logrotate with truncate method, additional option reopenOnTruncate was used. So my input section looked like:

input(
type="imfile"
File="/var/log/app_logs/*.log"
Tag="app_"
Ruleset="app_logs"
freshStartTail="on"
addMetadata="on"
startmsg.regex="^[0-9]{4}-[0-9]{2}-[0-9]{2} "
reopenOnTruncate="on"
)

Fixing Gutenberg error “The editor has encountered an unexpected error”

Posted on 2019-01-222019-01-23 by Ivan

After update to WP 5, I’ve faced with next issue, I’ve couldn’t add new post or edit existed. Looks like error happens because of misconfigured nginx and when new ‘Gutenberg’ editor is active (which is true by default for wordpress 5.0 and above).

Earlier I had nginx location / configured in next manner:

location / {
    try_files $uri $uri/ /index.php?$args;
}

Same configuration can be found on wordpress codex page:

And on nginx recipe page:

The issue caused by question sign in try_files directive, when $args is empty, index.php is called like this: “/index.php?”. Solution is simple:

$is_args
    “?” if a request line has arguments, or an empty string otherwise

After I changed location / block like this:

location / {
    try_files $uri $uri/ /index.php$is_args$args;
}

The problem is gone.

How to configure redmine service via terraform with persistent storage on amazon ECS

Posted on 2019-01-182019-01-21 by Ivan

First of all, I have very little experience of AWS and terraform, so it can be obviously for them who have enough experience, but it definitely saved me a lot of time if I found article like that early.

It wasn’t simple to figure out how to run redmine container on ECS.
The main problem was – persistent storage. Redmine suppose that it have persistent disk storage which remain the same between service restarts. If you have your docker host it’s simply to map hipervisor’s directory inside of the container, but when your docker nodes can be added and removed dynamically you can lost data on disk which was generated by app.
Amazon provide few ways to have persistent storage such as S3, EBS or EFS.

By nature S3 is a storage which accessibly over http, so if your app haven’t integration with S3 API it can’t be used (except when you mount S3 via fuse fs for example).
EBS is a remote block storage, so you need to connect block device to docker host, mount it and map inside container before you will be able to use it.
EFS by nature is just a NFS.

I wanted to find solution which will be most natural as possible. I wanted to keep docker and redmine image untouched (ie avoid of additional plugins/scripts/packages installation). So, I decided not to use S3, because it need something like s3fs to make S3 storage available for redmine.
I decided not to use EBS, because I’ve found reports when EBS stuck attached to host and can’t be re-attached to another host until initial host reboots.
EFS looked perfect, it could be mounted from different hosts, it kept data during application/hypervisor life cycles. Moreover, even if I didn’t find a simple way to use EFS, only thing I needed was nfs-common package.

I was lucky, because at the Aug of 2018 amazon announced support of docker volumes and docker volumes plugins, docker itself can mount NFS inside containers since version 17.06 (I couldn’t found it in the change log, but if you google it, you will found a lot of references to that). So, it was exactly what I wanted, I faced only with one cons – lack of documentation. I needed to use terraform for redmine configuration and its documentation didn’t specify how to exactly pass driver_opts to docker volume configuration, so here is solution:

First you need to specify mount point in task-definition.json

"mountPoints":[
     {
       "sourceVolume": "redmine_storage",
       "containerPath": "/usr/src/redmine/files"
     }
 ]

And here is volume block from from terraform code for volume specification:

volume {
    name = "redmine_storage"
    docker_volume_configuration {
        scope         = "task"
        driver      = "local"
        driver_opts = {
            "type" = "nfs"
            "device" = "${var.efs_dns}:/"
            "o" = "addr=${var.efs_dns},nfsvers=4.1,rsize=1048576,wsize=1048576,hard,timeo=600,retrans=2"
        }
 }
}

That’s all.
Code above is a part of redmine module, which have input variable efs_dns , so you can put your EFS address here if you configured it manually.

PS
Here you can find redmine S3 plugin, but I wanted to migrate existing redmine, so it looked like a lot of work, because I needed to modify rdemine’s DB and put files on S3 in manner which that plugin expects, so I decided that S3 not an option.

Galaxy S3: /efs/prox_cal doesn’t affect calibration settings under LineageOS

Posted on 2018-05-072018-05-07 by Ivan

Few days ago I replaced front glass on samsung i9300 and flashed LineageOS 14.1. After that I’ve found that proximity sensor stays in triggered state, it may happened because of lack of experience (I’ve used too much UV-glue, so it was everywhere) or because of additional screen protector which been installed. Anyway, always-triggered-proximity-sensor made phone partially usable (you can’t cancel any call without pushing power button few times). I’ve found a lot of articles how to calibrate proximity sensor like this one. More over I’ve found that I shouldn’t do any calculation to update /efs/prox_cal, after auto-calibration /efs/prox_cal updated automatically (at least with kernel that shipped by default), but anyway it didn’t help me. Every reboot calibration was reseted to zero.

For a first time, I’ve used proximity threshold value to fix proximity sensor, but later I saw that kernel driver read calibration directly from file and SELinux could be a reason why /efs/prox_cal haven’t effect.

Part that read calibration value looks like that:

#define CANCELATION_FILE_PATH "/efs/prox_cal"
...
int proximity_open_calibration(struct ssp_data *data)
{
 int iRet = 0;
 mm_segment_t old_fs;
 struct file *cancel_filp = NULL;
 
old_fs = get_fs();
 set_fs(KERNEL_DS);
 
cancel_filp = filp_open(CANCELATION_FILE_PATH, O_RDONLY, 0666);
 if (IS_ERR(cancel_filp)) {
 iRet = PTR_ERR(cancel_filp);
 if (iRet != -ENOENT)
 pr_err("[SSP]: %s - Can't open cancelation file\n",
 __func__);
 set_fs(old_fs);
 goto exit;
}

I’ve checked logcat and here is it:

05-06 21:29:12.916 3219 3219 W Binder:2377_A: type=1400 audit(0.0:39): avc: denied { read } for name="prox_cal" dev=mmcblk0p3 ino=46 scontext=u:r:system_server:s0 tcontext=u:object_r:efs_device_file:s0 tclass=file permissive=0

Definitely SELinux forbid reading of calibration file, I was surprised that SElinux capable to forbid kernel read call and now I feel a shame because usually I just disable it.

First I wanted to create new policy to allow reading of that file for kernel, but later I’ve found that /efs partition contains other calibration files, for example /efs/gyro_cal_data, I’ve checked security context of that files and found that it differs from /efs/prox_cal, it was u:object_r:sensors_data_file:s0 but prox_cal was created with default for /efs partition context u:object_r:efs_file:s0, so I’ve changed context:

# chcon u:object_r:sensors_data_file:s0 /efs/prox_cal

After that kernel started to load calibration value every boot. Looks like instructions like one mentioned above works for everyone who modified factory shipped prox_cal file with right security context, but I haven’t /efs/prox_cal before and it was created with wrong context.
I hope that story may help someone.

Unravel unknown thermistor

Posted on 2018-02-282018-03-01 by Ivan

Recently I made mistake and made PCB for arduino module where connect temperature sensor to A7 PIN. I’ve envisaged that sensor could be analog (diode) or digital. Soon I’ve learned that diode doesn’t provide enough accuracy even for ±5℃ (2mV/℃) and surprise-surprise A7 pin is only analog input so I can’t use DS18B.
I had haven’t any other temp sensors, fortunately I’ve remembered that I have broken battery controller from laptop and it should have some sort of temp sensor, here it is:
I’ve poked it with multimeter few times to be sure that it isn’t semiconductor sensor, but NTC with near 10K Ohm resistance at 25℃. I’ve decided to use it, but don’t know how much Ohm/℃ it has. I’ve planned to use linear approximation to convert resistance to temp, so i measure few points and here what i got:

Here is ADC value on X-Axis and temperature on Y-Axis. Pure perfect, i could use it with one pair of a and b coefficients in temperature range which i want.

How to update puppet 3 to puppet 4 on ubuntu 16

Posted on 2018-02-19 by Ivan

I spent near month to figured out why i can’t update puppet on ubuntu 16 with specially designed puppet_agent module. It was task full of confusing experience.

So, let’s start. For a beginning you shouldn’t debug update process from a console, because one of a bug related to puppet service. You could solve all problem which you will found with ‘puppet agent -t’ but when you will try to upgrade puppet when it daemonized, it will fail. So set ‘log_level=info’ in your puppet.conf and use kill to trigger puppet daemon.

 sudo kill -SIGUSR1 $(cat /var/run/puppet/agent.pid);

Next you should set ‘stringify_facts=false’ into puppet.conf. Now puppet_agent developers declared that they provide additional class ‘::puppet_agent::prepare::stringify_facts’ for that, but when i started upgrade procedure it wasn’t available (or i miss it), so here is external fact to provide stringify_facts settings and puppet.conf path:

require 'puppet'
 
Facter.add('puppet_config') do
 setcode do
 Puppet.settings['config']
 end
end
 
Facter.add('puppet_stringify_facts') do
 setcode do
 Puppet.settings['stringify_facts'] || false
 end
end

Call it something like puppet.rb and put it into <YOURMODULEDIR>/lib/facter.
Next puppet code will disable stringify_facts before doing upgrade:

if versioncmp($::clientversion, '4') < 0 {
 if $::puppet_stringify_facts {
 augeas { 'puppet.conf.stringify_facts':
 context => "/files${::puppet_config}/main",
 changes => [
 'set stringify_facts false',
 ],
 }
 } else {
<Do puppet upgrade here>
}

If you have puppet service defined somewhere, you will be faced with duplicate service declaration:

Feb 16 09:09:59 localhost puppet-agent[10026]: Could not retrieve catalog from remote server: Error 500 on SERVER: {"message":"Server Error: Evaluation Error: Error while evaluating a Resource Statement, Evaluation Error: Error while evaluating a Resource Statement, Duplicate declaration: Service[puppet] is already declared in file CUT:47; cannot redeclare at /etc/puppetlabs/code/environments/production_puppet4/modules/puppet_agent/manifests/service.pp:31 at /etc/puppetlabs/code/environments/production_puppet4/modules/puppet_agent/manifests/service.pp:31:7 on node llocalhost","issue_kind":"RUNTIME_ERROR","stacktrace":["Warning: The 'stacktrace' property is deprecated and will be removed in a future version of Puppet. For security reasons, stacktraces are not returned with Puppet HTTP Error responses."]}

So you should declare puppet_agent class in next maner:

 class {'::puppet_agent':
 collection => 'PC1',
 service_names => [],
 notify => Service['puppet']
 }

Interesting what will happens now if you will try to update puppet?

Feb 16 09:16:32 localhost puppet-agent[10474]: Caught TERM; exiting
Feb 16 09:16:32 localhost puppet-agent[8171]: Caught TERM; exiting
Feb 16 09:16:32 localhost systemd[1]: Stopping Puppet agent...
Feb 16 09:16:36 localhost systemd[1]: Stopped Puppet agent.

Tadaaam. Now you have barely installed puppet-agent package, deleted previous puppet package and killed puppet daemon:

ichurkin@localhost:~$ pgrep -f puppet
ichurkin@localhost:~$ dpkg -l|grep puppet
rF puppet 3.8.5-2 all configuration management system, agent
ii puppet-common 3.8.5-2 all configuration management system

It happens because during puppet-agent package installation systemd killed puppet daemon and all its children. So you need to fix unit file first:

[Service]
KillMode=process

Call it something like service.override.conf and put into <YOURMODULEDIR>/files, puppet code to fix that:

if $::os['name'] == 'Ubuntu' and versioncmp($::os['release']['major'], '16') >= 0 {
notify{ "Creating systemd ovveride file":}
 file {'/etc/systemd/system/puppet.service.d/':
 ensure => directory
 }~>
 file { '/etc/systemd/system/puppet.service.d/override.conf':
 mode => '0644',
 owner => 'root',
 group => 'root',
 source => 'puppet:///modules/puppet/puppet.service.override',
 }~>
 exec { 'systemd_reload':
 command => 'systemctl daemon-reload',
 path => [ '/usr/bin', '/bin', '/sbin', '/usr/sbin' ],
 refreshonly => true,
 before => Class['::puppet_agent']
 }

I tried to use fact ${::service_provider} instead of ugly os/release condition, but at least puppet 3.8 on ubuntu 16 return ‘debian’ instead of ‘systemd’.

Let’s update puppet?

Feb 16 04:49:14 localhost puppet-agent[10021]: Could not start Service[puppet]: Execution of '/usr/sbin/service puppet start' returned 1: Failed to start puppet.service: Unit puppet.service is masked.
Feb 16 04:49:14 localhost puppet-agent[10021]: (/Stage[main]/Puppet_agent::Service/Service[puppet]/ensure) change from stopped to running failed: Could not start Service[puppet]: Execution of '/usr/sbin/service puppet start' returned 1: Failed to start puppet.service: Unit puppet.service is masked.

Once again puppet render itself stopped, i think it may caused because service provider is debian instead of systemd, i too exhausted to search for right solution, so here another one dirty hack:

 exec { 'puppetagent_transition_restart':
 path => '/bin:/sbin:/usr/bin:/usr/sbin',
 command => '/opt/puppetlabs/bin/puppet resource service puppet enable=true ensure=running',
 require => Class['::puppet_agent']
 }

That’s all.

List of related bugs below:
https://tickets.puppetlabs.com/browse/MODULES-3453
https://tickets.puppetlabs.com/browse/PUP-5637
https://tickets.puppetlabs.com/browse/PUP-3931
https://github.com/puppetlabs/puppet/pull/3699
https://github.com/puppetlabs/puppet/pull/3700
https://tickets.puppetlabs.com/browse/PUP-4512

IvanBayan

Author: Ivan

STM32Cube FW_F1 V1.8.0 package breaks HAL time source init

Unravel unknown thermistor